PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.3547s0010.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family HB-other
Protein Properties Length: 661aa    MW: 75455.3 Da    PI: 7.448
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.3547s0010.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.45e-182682157
                            TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
                Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                            ++kR   +++qle+Le+ +  + yps+  r+eL+ +lgL++rq ++WF+ rR k++k
  SapurV1A.3547s0010.2.p 26 KSKRKMKSASQLEILEKIYSVDTYPSEVVRAELSVQLGLSDRQLQMWFCHRRLKDRK 82
                            6799***************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.7E-171382IPR009057Homeodomain-like
SuperFamilySSF466899.84E-162082IPR009057Homeodomain-like
PROSITE profilePS5007116.2442383IPR001356Homeobox domain
SMARTSM003898.9E-152587IPR001356Homeobox domain
PfamPF000461.6E-152682IPR001356Homeobox domain
CDDcd000869.82E-132682No hitNo description
SMARTSM005711.0E-21520579IPR018501DDT domain
PROSITE profilePS5082717.101520579IPR018501DDT domain
PfamPF027916.1E-18521576IPR018501DDT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 661 aa     Download sequence    Send to blast
MEEAAADGGG VEVEAKNKTP GEGESKSKRK MKSASQLEIL EKIYSVDTYP SEVVRAELSV  60
QLGLSDRQLQ MWFCHRRLKD RKAPSVKRPC KESPSLAGMP SGGETGVVAE VGNEHGSGSS  120
PFVLGVDPRR AVGRPTGVAV PRISADVQTM NRYYEPQQSI AELRAIAFVE AQLGEPLRED  180
GPILGMEFDP LPPDAFGAPI GSATTGQQKQ PVRVFEANLY ERPDVKPIKS TTRTLHEYQF  240
LPQQPTVRAE AYERAAPSCQ YGSPADGHNV KTGSISATLP FMHANEQVSS EYGLSNQVPS  300
LSLMPQESRQ GHRFPSTTER ITHDEDALRM ERKRKSEEAR IAREVEAHEK RIRKELEKQD  360
ILRRRREEQM RKEMEKHDRE RRKEEERLLR EKQREVERYQ REQRRELERR EKYLQKESIR  420
VEKMRQKEEL RREKEAARQK AATERARARR MAKESLELID DERLELMEVA ASSKGLPSII  480
PLDFETLQNL DLFRDKLTEF PPKSVLLKRP FLIQPWNDSE ENVGNLLMVW RFLITFADIL  540
GIWPFTLDEF VQAFHDYDPR LLSEIHVSLL KSIIKDIEDV ARTPSTGLGQ NQNGAANPGG  600
GHPQIVEGAY AWGFDLRSWQ RHLNPLTWPE ILRQFGLSAG FGPQLKKRNV DQAYLRDDNE  660
*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011047700.10.0PREDICTED: uncharacterized protein LOC105141971 isoform X3
SwissprotQ9FFH10.0RLT2_ARATH; Homeobox-DDT domain protein RLT2
TrEMBLB9HGS00.0B9HGS0_POPTR; Uncharacterized protein
STRINGPOPTR_0007s01330.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44180.28e-89Homeodomain-like transcriptional regulator